PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_005034
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family WRKY
Protein Properties Length: 337aa    MW: 37609.7 Da    PI: 5.8313
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_005034genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.13.6e-28124184259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                   Dgy+WrKYGqK++ g+ +prsYYrCt++   +C+++k+v+rs++d  ++eitY+g+H+++
  DCAR_005034 124 ADGYSWRKYGQKDILGAAHPRSYYRCTYRktrSCQATKQVQRSDNDSAIFEITYKGKHTCH 184
                  6***************************98899**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-27113185IPR003657WRKY domain
SMARTSM007744.1E-38123185IPR003657WRKY domain
SuperFamilySSF1182903.53E-24123184IPR003657WRKY domain
PfamPF031062.4E-26125184IPR003657WRKY domain
PROSITE profilePS5081121.735125181IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
METSSEFEKS TIASELIQGM EVAKQLKFHL TTASSSPENL LTLLQKILSS YDTALLLLNW  60
TESSAGQPQT LPAMLAQLPE SPISTYESGD FKDHHRDVSK KRKALPTWKD HVRISSDNGG  120
ENSADGYSWR KYGQKDILGA AHPRSYYRCT YRKTRSCQAT KQVQRSDNDS AIFEITYKGK  180
HTCHKAGNSV PPAKPVKQEQ NRSDHRPQPP NEALINFRAN LRVKTDDCRI HEAADSFSFP  240
SGMEYNSQLS SFSQLVNEDL MGTFSPSFIS PDTTGSSYFS VSPYQMNSFG QLSDSDYTEI  300
ISANTSTTTS PILDLDFQID EVNLDSNFPF DMPGFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-131251811669WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011022522.11e-108PREDICTED: probable WRKY transcription factor 41
TrEMBLS5CKD41e-107S5CKD4_JATCU; Uncharacterized protein
STRINGPOPTR_0003s13840.11e-106(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18432467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.18e-54WRKY family protein